dorothea_mm: Mouse DoRothEA
In saezlab/dorothea: Collection Of Human And Mouse TF Regulons
dorothea_mm R Documentation
Mouse DoRothEA
Description
A table reporting signed human TF-target interactions. This database covers
in total 1179 TFs targeting 17,410 genes with 410,455 unique interactions.
In addition, each TF is accompanied with an empirical confidence level that
was derived from the number of supporting evidences for this
TF/interaction. The range is from A (high quality) to E (low quality).
Format
A table of mouse TF-target interactions:
- tf
TF identifier as MGI symbols
- confidence
summary confidence score classifying regulons based on
their quality
- target
target identifier as MGI symbols
- mor
mode of regulation indicating the effect of a TF on the
target
Source
saezlab/dorothea documentation built on Feb. 24, 2024, 8:12 p.m.
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| dorothea_mm | R Documentation |
Mouse DoRothEA
Description
A table reporting signed human TF-target interactions. This database covers in total 1179 TFs targeting 17,410 genes with 410,455 unique interactions. In addition, each TF is accompanied with an empirical confidence level that was derived from the number of supporting evidences for this TF/interaction. The range is from A (high quality) to E (low quality).
Format
A table of mouse TF-target interactions:
- tf
TF identifier as MGI symbols
- confidence
summary confidence score classifying regulons based on their quality
- target
target identifier as MGI symbols
- mor
mode of regulation indicating the effect of a TF on the target
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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