R/datasets.R

In roryk/bcbioSinglecell: Single-Cell RNA-Seq Utilities

#' Cell-Cycle Markers
#'
#' @family Marker Data
#' @author Michael Steinbaugh
#'
#' @examples
#' names(cellCycleMarkers)
"cellCycleMarkers"



#' Cell-Type Markers
#'
#' @family Marker Data
#' @author Michael Steinbaugh
#'
#' @examples
#' names(cellTypeMarkers)
"cellTypeMarkers"



# Minimal Examples =============================================================
#' Sanitized Markers Example
#'
#' @family Minimal Example Data
#' @author Michael Steinbaugh
#'
#' @examples
#' glimpse(all_markers_small)
"all_markers_small"



#' Cell Ranger Example
#'
#' @family Minimal Example Data
#' @author Michael Steinbaugh
#'
#' @examples
#' show(cellranger_small)
"cellranger_small"



#' inDrops Example
#'
#' @family Minimal Example Data
#' @author Michael Steinbaugh
#'
#' @examples
#' show(indrops_small)
"indrops_small"



#' Known Markers Example
#'
#' @family Minimal Example Data
#' @author Michael Steinbaugh
#'
#' @examples
#' glimpse(known_markers_small)
"known_markers_small"



#' Seurat Example
#'
#' @family Minimal Example Data
#' @author Michael Steinbaugh
#'
#' @examples
#' show(seurat_small)
"seurat_small"