plotCellCounts: Plot Cell Counts

In roryk/bcbioSinglecell: Single-Cell RNA-Seq Utilities

Description

Plot Cell Counts

Usage

plotCellCounts(object, ...)

## S4 method for signature 'SingleCellExperiment'
plotCellCounts(object, interestingGroups,
  fill = NULL, title = "cell counts")

Arguments

object	Object.
...	Additional arguments.
interestingGroups	Character vector of interesting groups. Must be formatted in camel case and intersect with sampleData() colnames.
fill	Desired ggplot fill scale. Must supply discrete values. When set to NULL, the default ggplot2 color palette will be used. If manual color definitions are desired, we recommend using ggplot2::scale_fill_manual().
title	Plot title.

Value

ggplot.

Author(s)

Michael Steinbaugh, Rory Kirchner

See Also

Other Quality Control Functions: barcodeRanksPerSample, filterCells, metrics, plotGenesPerCell, plotMitoRatio, plotMitoVsCoding, plotNovelty, plotQC, plotReadsPerCell, plotUMIsPerCell, plotZerosVsDepth

Examples

# SingleCellExperiment ====
plotCellCounts(cellranger_small)

roryk/bcbioSinglecell documentation built on May 27, 2019, 10:44 p.m.