disperPlot: Reference dataset(disperPlot)

In quon-titative-biology/scBFA: A dimensionality reduction tool using gene detection pattern to mitigate noisy expression profile of scRNA-seq

Description

A dataframe contains all the gene-wise dispersion estimates loess curve for 14 datasets we benchmarked in Figure 2.a

Usage

data(disperPlot)

Details

The variable in the columns are: fitted_dispersion: the log value of gene-wise dispersion after fitting a loess curve with respect to TPM value. Note that the genes at the top 2.5 meantpm is average tpm value calculated per gene dataset are nams for datasets variance is gene selection method, here is HEG vs HVG

quon-titative-biology/scBFA documentation built on March 24, 2020, 7:30 p.m.