eqTest_atlas.sanger_BP4: Example of the output produced by the function...
In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
eqTest_atlas.sanger_BP4 R Documentation
Example of the output produced by the function equivTestSorensen. It contains the equivalence test for comparing two lists at level 4 of ontology BP.
Description
The output of an equivalence test to detect biological similarity between the lists atlas and sanger from allOncoGeneLists, based on the normal asymptotic distribution.
Usage
data(eqTest_atlas.sanger_BP4)
Format
An exclusive object from 'goSorensen' of the class "equivSDhtest"
Details
The parameters considered to execute this test are: irrelevance limit d0 = 0.4444 and confidence level conf.level = 0.95.
Consider this object only as an illustrative example, which is valid exclusively for the lists atlas and sanger from the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
pablof1988/goSorensen documentation built on Dec. 15, 2024, 12:01 p.m.
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| eqTest_atlas.sanger_BP4 | R Documentation |
Example of the output produced by the function equivTestSorensen. It contains the equivalence test for comparing two lists at level 4 of ontology BP.
Description
The output of an equivalence test to detect biological similarity between the lists atlas and sanger from allOncoGeneLists, based on the normal asymptotic distribution.
Usage
data(eqTest_atlas.sanger_BP4)
Format
An exclusive object from 'goSorensen' of the class "equivSDhtest"
Details
The parameters considered to execute this test are: irrelevance limit d0 = 0.4444 and confidence level conf.level = 0.95.
Consider this object only as an illustrative example, which is valid exclusively for the lists atlas and sanger from the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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