allContTabs: Example of the output produced by the function...
In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)
allContTabs R Documentation
Example of the output produced by the function allBuildEnrichTable.
Description
This object contains all the enrichment contingency tables to compare all possible pairs of lists from allOncoGeneLists across GO-Levels 3 to 10, and for the ontologies BP, CC, and MF.
Usage
data(allContTabs)
Format
An exclusive object from goSorensen of the class "allTableList"
Details
The attribute enriched is present in each element of this output, meaning that there is an enrichment matrix, similar to the one obtained with the function enrichedIn, for each ontology and GO-Level contained in this object.
Consider this object only as an illustrative example, which is valid exclusively for the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
pablof1988/goSorensen documentation built on Dec. 15, 2024, 12:01 p.m.
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| allContTabs | R Documentation |
Example of the output produced by the function allBuildEnrichTable.
Description
This object contains all the enrichment contingency tables to compare all possible pairs of lists from allOncoGeneLists across GO-Levels 3 to 10, and for the ontologies BP, CC, and MF.
Usage
data(allContTabs)
Format
An exclusive object from goSorensen of the class "allTableList"
Details
The attribute enriched is present in each element of this output, meaning that there is an enrichment matrix, similar to the one obtained with the function enrichedIn, for each ontology and GO-Level contained in this object.
Consider this object only as an illustrative example, which is valid exclusively for the data allOncoGeneLists contained in this package. Note that gene lists, GO terms, and Bioconductor may change over time. The current version of these results were generated with Bioconductor version 3.20.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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