degeneratePWM: Create a degenerate PWM i.e. for each aa group, set weight to...
In omarwagih/rmimp: Predicting the impact of mutations on kinase-substrate phosphorylation
View source: R/pwm-functions.r
Description
Create a degenerate PWM
i.e. for each aa group, set weight to the best weight of the group at that position
e.g. R-2 has weight 0.7, K-2 has weight 0.1. Set both R-2 and K-2 to 0.7
Usage
1
degeneratePWM(pwm, dgroups = c("DE", "KR", "ILMV", "QN", "ST"))
Arguments
pwm
position weight matrix
dgroups
groups of amino acids
omarwagih/rmimp documentation built on May 18, 2020, 3:11 p.m.
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View source: R/pwm-functions.r
Description
Create a degenerate PWM i.e. for each aa group, set weight to the best weight of the group at that position e.g. R-2 has weight 0.7, K-2 has weight 0.1. Set both R-2 and K-2 to 0.7
Usage
1 | degeneratePWM(pwm, dgroups = c("DE", "KR", "ILMV", "QN", "ST"))
|
Arguments
pwm |
position weight matrix |
dgroups |
groups of amino acids |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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