Files in olapuentesantana/easier
Estimate Systems Immune Response from RNA-seq data
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/assess_immune_response.R
R/calc_z_score.R
R/categorize_TMB.R
R/compute_Ayers_expIS.R
R/compute_CC_pairs.R
R/compute_CCpair_score.R
R/compute_CYT.R
R/compute_Davoli_IS.R
R/compute_IFNy.R
R/compute_IMPRES_MSI.R
R/compute_LR_pairs.R
R/compute_RIR.R
R/compute_Roh_IS.R
R/compute_TF_activity.R
R/compute_TLS.R
R/compute_Tcell_inflamed.R
R/compute_cell_fractions.R
R/compute_chemokines.R
R/compute_pathway_activity.R
R/compute_scores_immune_response.R
R/discretize.R
R/easier-package.R
R/explore_biomarkers.R
R/get_OE_bulk.R
R/get_semi_random_OE.R
R/predict_immune_response.R
R/predict_with_rmtlr.R
R/reannotate_genes.R
R/retrieve_easier_score.R
R/rmtlr_test.R
README.md
inst/CITATION
man/assess_immune_response.Rd
man/calc_z_score.Rd
man/categorize_TMB.Rd
man/compute_Ayers_expIS.Rd
man/compute_CC_pairs.Rd
man/compute_CCpair_score.Rd
man/compute_CYT.Rd
man/compute_Davoli_IS.Rd
man/compute_IFNy.Rd
man/compute_IMPRES_MSI.Rd
man/compute_LR_pairs.Rd
man/compute_RIR.Rd
man/compute_Roh_IS.Rd
man/compute_TF_activity.Rd
man/compute_TLS.Rd
man/compute_Tcell_inflamed.Rd
man/compute_cell_fractions.Rd
man/compute_chemokines.Rd
man/compute_pathway_activity.Rd
man/compute_scores_immune_response.Rd
man/discretize.Rd
man/easier-package.Rd
man/explore_biomarkers.Rd
man/get_OE_bulk.Rd
man/get_semi_random_OE.Rd
man/predict_immune_response.Rd
man/predict_with_rmtlr.Rd
man/reannotate_genes.Rd
man/retrieve_easier_score.Rd
man/rmtlr_test.Rd
tests/testthat.R
tests/testthat/test-easier_run.R
vignettes/easier_image.png
vignettes/easier_logo.png
vignettes/easier_user_manual.Rmd
vignettes/references_easier.bib
