summarizeTable: Summarize SCtkExperiment
In mmkhan19/singleCellTK: Interactive Analysis of Single Cell RNA-Seq Data
View source: R/miscFunctions.R
summarizeTable R Documentation
Summarize SCtkExperiment
Description
Creates a table of summary metrics from an input SCtkExperiment.
Usage
summarizeTable(inSCE, useAssay = "counts", expressionCutoff = 1700)
Arguments
inSCE
Input SCtkExperiment object. Required
useAssay
Indicate which assay to summarize. Default is "counts"
expressionCutoff
Count number of samples with fewer than
expressionCutoff genes. The default is 1700.
Value
A data.frame object of summary metrics.
Examples
data("mouseBrainSubsetSCE")
summarizeTable(mouseBrainSubsetSCE)
mmkhan19/singleCellTK documentation built on March 22, 2022, 7:43 a.m.
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View source: R/miscFunctions.R
| summarizeTable | R Documentation |
Summarize SCtkExperiment
Description
Creates a table of summary metrics from an input SCtkExperiment.
Usage
summarizeTable(inSCE, useAssay = "counts", expressionCutoff = 1700)
Arguments
inSCE |
Input SCtkExperiment object. Required |
useAssay |
Indicate which assay to summarize. Default is "counts" |
expressionCutoff |
Count number of samples with fewer than expressionCutoff genes. The default is 1700. |
Value
A data.frame object of summary metrics.
Examples
data("mouseBrainSubsetSCE")
summarizeTable(mouseBrainSubsetSCE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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