plot_accuracy_sensitivity_specificity: list of plots for (1) accuracy and (2) sensitivity +...

View source: R/fn_spongeffects_utility.R

plot_accuracy_sensitivity_specificityR Documentation

list of plots for (1) accuracy and (2) sensitivity + specificity (see Boniolo and Hoffmann 2022 et al. Fig. 3a and Fig. 3b)

Description

list of plots for (1) accuracy and (2) sensitivity + specificity (see Boniolo and Hoffmann 2022 et al. Fig. 3a and Fig. 3b)

Usage

plot_accuracy_sensitivity_specificity(
  trained_model,
  central_genes_model = NA,
  all_expression_model = NA,
  random_model,
  training_dataset_name = "TCGA",
  testing_dataset_name = "TCGA",
  subtypes
)

Arguments

trained_model

returned from train_and_test_model

central_genes_model

returned from build_classifier_central_genes()

all_expression_model

training and testing like central_genes_model but on ALL common expression data

random_model

returned from train_and_test_model using the randomization

training_dataset_name

name of training (e.g., TCGA)

testing_dataset_name

name of testing set (e.g., METABRIC)

subtypes

array of subtypes (e.g., c("Normal", "LumA", "LumB", "Her2", "Basal"))

Value

list of plots for (1) accuracy and (2) sensitivity + specificity


mlist/SPONGE documentation built on Feb. 12, 2023, 1:22 a.m.