fn_OE_module: Function to calculate enrichment scores of modules OE...

In mlist/SPONGE: Sparse Partial Correlations On Gene Expression

Function to calculate enrichment scores of modules OE (functions taken from: Jerby-Arnon et al. 2018)

Description

Function to calculate enrichment scores of modules OE (functions taken from: Jerby-Arnon et al. 2018)

Usage

fn_OE_module(
  NormCount,
  gene.sign,
  bin.size = 100,
  num.rounds = 1000,
  set_seed = 42
)

Arguments

NormCount	normalized counts
gene.sign	significant genes
bin.size	bin size (default: 100)
num.rounds	number of rounds (default: 1000)
set_seed	seed size (default: 42)

Value

Signature scores

mlist/SPONGE documentation built on Feb. 12, 2023, 1:22 a.m.