plotPCAPlotly: Plot PCA

In mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package

Description

Plot PCA

Usage

plotPCAPlotly(df.input, condition.color.vec,
  condition.color.name = "condition", condition.shape.vec = NULL,
  condition.shape.name = "condition", columnTitle = "Title",
  pc.a = "PC1", pc.b = "PC2")

Arguments

df.input	Input data object that contains the data to be plotted. Required
condition.color.vec	color vector. Required
condition.color.name	color variable name. Required
condition.shape.vec	shape vector. Required
condition.shape.name	shape variable name. Required
columnTitle	Title to be displayed at top of heatmap.
pc.a	pc.1
pc.b	pc.2

Value

the plot

Examples

data('iris')
plotPCAPlotly(t(iris[,1:4]),
condition.color.vec = c(rep(1,100), rep(0,50)),
condition.shape.vec = c(rep(0,100), rep(1,50)))

mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.