findRAfromCount: Return the Relative Abundance (RA) data for the given count...
In mani2012/PathoStat: PathoStat Statistical Microbiome Analysis Package
Description
Usage
Arguments
Value
Examples
Description
Return the Relative Abundance (RA) data for the given count OTU table
Usage
1
findRAfromCount(count_otu)
Arguments
count_otu
Count OTU table
Value
ra_otu Relative Abundance (RA) OTU table
Examples
1
2
3
4
data_dir <- system.file("data", package = "PathoStat")
infileName <- "pstat_data.rda"
pstat_test <- loadPstat(data_dir, infileName)
ra_otu <- findRAfromCount(phyloseq::otu_table(pstat_test))
mani2012/PathoStat documentation built on April 3, 2020, 7:41 p.m.
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Description Usage Arguments Value Examples
Description
Return the Relative Abundance (RA) data for the given count OTU table
Usage
1 | findRAfromCount(count_otu)
|
Arguments
count_otu |
Count OTU table |
Value
ra_otu Relative Abundance (RA) OTU table
Examples
1 2 3 4 | data_dir <- system.file("data", package = "PathoStat")
infileName <- "pstat_data.rda"
pstat_test <- loadPstat(data_dir, infileName)
ra_otu <- findRAfromCount(phyloseq::otu_table(pstat_test))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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