getGeneInfoByEntrez: Gene information for given list of gene Entrez IDs

In lptolik/synaptome.db: Synamptosome Proteome Database

Gene information for given list of gene Entrez IDs

Description

Get gene information for set of gene Entrez IDs. Function lookup for name in Human Entrez ID and Mouse Entrez Id data and return following features for all found genes: GeneID (internal database ID), Localisation (presynaptic, postsynaptic, synaptosome), MGI (MGI ID), HumanEntrez (Human Entrez ID), MouseEntrez (Mouse Entrez ID), HumanName (Human gene name), MouseName (Mouse gene name), PaperPMID (PMID IDs for the publications where the genes were reported), Paper (papers where specific genes were reported in a format FIRSTAUTHOR_YEAR), Year, SpeciesTaxID (specie the original experiment was performed on), BrainRegion (Brain region where the specific genes were identified, according to the paper)

Usage

getGeneInfoByEntrez(entrez)

Arguments

entrez

vector of Entres IDs. Function accepts both integers and characters.

Value

data.frame with fields specified above.

See Also

Other GeneInfo functions: getGeneInfoByIDs(), getGeneInfoByName(), getGeneInfoByPapers()

Examples

# get information for specific gene
t <- getGeneInfoByEntrez(1742)
# get information for specific character string Entres representation
t <- getGeneInfoByEntrez("1742")

# get information for the list of genes
t <- getGeneInfoByName(c(1741, 1742, 1739, 1740))

lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.