getGeneIdByPapers: Get list of GeneIDs for genes found in specified papers
In lptolik/synaptome.db: Synamptosome Proteome Database
getGeneIdByPapers R Documentation
Get list of GeneIDs for genes found in specified papers
Description
Get list of GeneIDs for genes found in specified papers
Usage
getGeneIdByPapers(pmids, cnt = 1)
Arguments
pmids
vector of PMIDs to search for genes
cnt
minimal number of papers that mentioned gene
Value
tibble wiht GeneID and Npmid columns for genes and paper count
data respectively.
Examples
res<- getAllGenes4Compartment(compartmentID = 1)
gnt<-getGeneInfoByIDs(res$GeneID)
pmids<-names(sort(table(gnt$PaperPMID))[1:5])
cntT<-synaptome.db:::getGeneIdByPapers(pmids,3)
lptolik/synaptome.db documentation built on Sept. 13, 2023, 2:50 p.m.
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| getGeneIdByPapers | R Documentation |
Get list of GeneIDs for genes found in specified papers
Description
Get list of GeneIDs for genes found in specified papers
Usage
getGeneIdByPapers(pmids, cnt = 1)
Arguments
pmids |
vector of PMIDs to search for genes |
cnt |
minimal number of papers that mentioned gene |
Value
tibble wiht GeneID and Npmid columns for genes and paper count data respectively.
Examples
res<- getAllGenes4Compartment(compartmentID = 1)
gnt<-getGeneInfoByIDs(res$GeneID)
pmids<-names(sort(table(gnt$PaperPMID))[1:5])
cntT<-synaptome.db:::getGeneIdByPapers(pmids,3)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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