pathway: Statistics about pathways

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Calculates some statistics of the genes, like the biggest pathway, the gene in more pathways, h-index and entropy or information content for the genes per pathway and pathways for genes and they percentage of the maximum. Uses check to validate the input

Usage

pathway(object, pathway)

## S4 method for signature 'GeneSetCollection,character'
pathway(object, pathway)

## S4 method for signature 'GeneSetCollection,missing'
pathway(object, pathway)

Arguments

object	A GeneSetCollection object
pathway	A character of the pathway to analyze. If missing it will analyze all pathways

Value

If a single pathway is provided invisible a list of statistics (the statistics will be printed on the screen), otherwise the data.frame of statistics.

Methods (by class)

• object = GeneSetCollection,pathway = character: Calculates statistics for a single pathway

• object = GeneSetCollection,pathway = missing: Calculates statistics for all pathways

Author(s)

Llu<c3><ad>s Revilla

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.