estimate: Estimate a GeneSetCollection

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Given information about a GeneSetCollection it estimates the range of the different parameters. If the parameter should be a matrix, it only outputs the maximum and the lowest value it could reach.

Usage

estimate(nGenes = NULL, nPathways = NULL, genesPerPathway = NULL,
  pathwaysPerGene = NULL, sizeGenes = NULL, sizePathways = NULL,
  sizePerGenes = NULL, sizePerPathways = NULL)

Arguments

nGenes	Numeric value with the number of genes
nPathways	Numeric value with the number of pathways
genesPerPathway	Numeric vector with the number of genes per pathway
pathwaysPerGene	Numeric vector with the number of pathways per gene
sizeGenes	Numeric matrix with the size of pathways in genes see sizeGenes
sizePathways	Numeric matrix with the size of genes in pathways see sizePathways
sizePerGenes	A numeric vector with the amount of pathways of different size per genes see sizesPerGene
sizePerPathways	A numeric vector with the amount of genes of different size per pathways see sizesPerPathway

Value

A data.frame with the max and minimum value for each estimate. NA is returned if it cannot be estimated.

Examples

estimate(nGenes = 100)
estimate(nPathways = 100)
estimate(nGenes = 100, nPathways = 100)

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.