condPerPathways: Conditional probability by genes per pathway

In llrs/GSEAdv: Analyze Gene Sets Collections Properites

Description

Calculates the probability of having a number of genes per pathway given the number of pathways in a gene

Usage

condPerPathways(object, pathwaysPerGene)

## S4 method for signature 'GeneSetCollection,missing'
condPerPathways(object)

## S4 method for signature 'GeneSetCollection,numeric'
condPerPathways(object,
  pathwaysPerGene)

Arguments

object	A GeneSetCollection
pathwaysPerGene	A numeric vector of the number of pathways per genes.

Value

A matrix with the probabilities

Methods (by class)

• object = GeneSetCollection,pathwaysPerGene = missing: Check the conditional probability given the number of pathways

• object = GeneSetCollection,pathwaysPerGene = numeric: Check the conditional probability given the number of pathways

Author(s)

Llu<c3><ad>s Revilla Sancho

See Also

condPerGenes

Examples

condPerPathways(Info)
condPerPathways(Info, 2)

llrs/GSEAdv documentation built on May 29, 2019, 6 p.m.