plotRCAUMAP: Plot umap of projection to the RCA panel
In linquynus/RCAv2-beta: Reference Component Analysis
Description
The presence of cell type estimates, relative ranks and confindence scores are detected automatically and are plotted accordingly.
Usage
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plotRCAUMAP(
rca.obj,
cellPropertyList = NULL,
folderpath = ".",
filename = "RCA_UMAP.pdf",
fontsize = 10
)
Arguments
rca.obj
RCA object
cellPropertyList
list of cell properties to plot
folderpath
path to save umap to
filename
file name of saved umap
fontsize
Size of the font used for plotting
linquynus/RCAv2-beta documentation built on Aug. 9, 2020, 12:34 a.m.
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Description
The presence of cell type estimates, relative ranks and confindence scores are detected automatically and are plotted accordingly.
Usage
1 2 3 4 5 6 7 | plotRCAUMAP(
rca.obj,
cellPropertyList = NULL,
folderpath = ".",
filename = "RCA_UMAP.pdf",
fontsize = 10
)
|
Arguments
rca.obj |
RCA object |
cellPropertyList |
list of cell properties to plot |
folderpath |
path to save umap to |
filename |
file name of saved umap |
fontsize |
Size of the font used for plotting |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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