estimateCellTypeFromProjection: Estimate the most likely cell type from the projection to the...

In linquynus/RCAv2-beta: Reference Component Analysis

Description

Estimate the most likely cell type from the projection to the reference panel

Usage

estimateCellTypeFromProjection(
  rca.obj,
  confidence = NULL,
  ctRank = F,
  cSCompute = F
)

Arguments

rca.obj	RCA object.
confidence	a parameter indicating the difference between z-scores. If the difference is below this threshold, the cell type will be set to unknown. Default is NULL.
ctRank	parameter indicating whether a relative rank coloring for each cell type shall be computed. Default is FALSE.
cSCompute	parameter indicating wheter the confidence score should be computed for each cell. Default is FALSE.

Value

RCA object.

linquynus/RCAv2-beta documentation built on Aug. 9, 2020, 12:34 a.m.