Files in linquynus/RCAv2-beta
Reference Component Analysis
.Rbuildignore
.Rhistory
.Rproj.user/2313D0C8/cpp-definition-cache
.Rproj.user/2313D0C8/pcs/debug-breakpoints.pper
.Rproj.user/2313D0C8/pcs/files-pane.pper
.Rproj.user/2313D0C8/pcs/source-pane.pper
.Rproj.user/2313D0C8/pcs/windowlayoutstate.pper
.Rproj.user/2313D0C8/pcs/workbench-pane.pper
.Rproj.user/2313D0C8/persistent-state
.Rproj.user/2313D0C8/rmd-outputs
.Rproj.user/2313D0C8/saved_source_markers
.Rproj.user/2313D0C8/sources/prop/0D139A01
.Rproj.user/2313D0C8/sources/prop/2F9C35DD
.Rproj.user/2313D0C8/sources/prop/3AFFC44F
.Rproj.user/2313D0C8/sources/prop/A38B1358
.Rproj.user/2313D0C8/sources/prop/C0E8D003
.Rproj.user/2313D0C8/sources/prop/EF258DA7
.Rproj.user/2313D0C8/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RCA-class.R
R/VioplotQCForCluster.R
R/buildReferencePanel.R
R/computePairDE.R
R/computeUMAP.R
R/createRCAObject.R
R/createRCAObjectFrom10X.R
R/dataClust.R
R/dataDE.R
R/dataFilter.R
R/dataLogNormalise.R
R/dataProject.R
R/dataSClust.R
R/dataSNN.R
R/doGoEnrichment.R
R/doKEGGEnrichment.R
R/estimateCellTypeFromProjection.R
R/estimateCellTypeFromProjectionPerCluster.R
R/parameterSpaceSNN.R
R/parameterSpaceSeurat.R
R/performClusterSpecificQC.R
R/plotClusterQuality.R
R/plotDEHeatmap.R
R/plotRCAClusterComposition.R
R/plotRCAHeatmap.R
R/plotRCAUMAP.R
R/plotRCAUMAP3D.R
R/sysdata.rda
RCAv2.Rproj
README.MD
Tutorial/BM_AfterQC.png
Tutorial/BM_BeforeQC.png
Tutorial/BM_heatmap.png
Tutorial/Cluster_Enrichment.png
Tutorial/Combined_UMAPs_Seurat_RCA.png
Tutorial/DE_Heatmaps.png
Tutorial/Elbow.png
Tutorial/Example_3D_Umap.png
Tutorial/Heatmap_Example_With_Threshold.png
Tutorial/OverviewFig.png
Tutorial/ParameterPlotDBSCAN.PNG
Tutorial/PerClusterAssignment.png
Tutorial/QC_Example.png
Tutorial/RCA_GO_Example.png
Tutorial/RCA_Heatmap_Seurat.png
Tutorial/RCA_KEGG_Example.png
Tutorial/UMAP_Seurat.png
Tutorial/Umap_ClusterFree.png
Tutorial/Umap_NK_marker_CD56_Example.png
Tutorial/Umap_clusters_Example.png
Tutorial/Umap_ct_based_clustering_Example.png
man/ComputePairWiseDE.Rd
man/RCA-class.Rd
man/VioplotQCForCluster.Rd
man/buildReferencePanel.Rd
man/computeUMAP.Rd
man/createRCAObject.Rd
man/createRCAObjectFrom10X.Rd
man/dataClust.Rd
man/dataDE.Rd
man/dataFilter.Rd
man/dataLogNormalise.Rd
man/dataProject.Rd
man/dataSClust.Rd
man/dataSNN.Rd
man/doEnrichGo.Rd
man/doEnrichKEGG.Rd
man/estimateCellTypeFromProjection.Rd
man/estimateCellTypeFromProjectionPerCluster.Rd
man/parameterSpaceSNN.Rd
man/parameterSpaceSeurat.Rd
man/performClusterSpecificQC.Rd
man/plotClusterQuality.Rd
man/plotDEHeatmap.Rd
man/plotRCAClusterComposition.Rd
man/plotRCAHeatmap.Rd
man/plotRCAUMAP.Rd
man/plotRCAUMAP3D.Rd
