Files in jpromeror/EventPointer
An effective identification of alternative splicing events using junction arrays and RNA-Seq data

.DS_Store

.gitignore

DESCRIPTION

EventPointer.Rproj

NAMESPACE

NEWS

R/AllEvents_RNASeq.R R/AllEvents_RNASeq_MP.R R/ArrayDatamultipath.R R/ArraysData.R R/AuxFunctions.R R/CDFfromGTF.R R/CDFfromGTF_Multipath.R R/CreateExSmatrix.R R/EventDetection.R R/EventDetectionMultipath.R R/EventDetection_transcriptome.R R/EventPointer.R R/EventPointer_Bootstraps.R R/EventPointer_IGV.R R/EventPointer_RNASeq.R R/EventPointer_RNASeq_IGV.R R/EventPointer_RNASeq_TranRef.R R/EventPointer_RNASeq_TranRef_IGV.R R/EventXtrans.R R/Events_ReClassification.R R/FindPrimers.R R/Fit.R R/GetPSI_FromTranRef.R R/MyPrimers.R R/MyPrimers_taqman.R R/PSI_Statistic.R R/PSIss.R R/PrepareBam_EP.R R/Protein_Domain_Enrichment.R R/ResulTable.R R/SF_Prediction.R R/SG_RNASeq.R R/SG_reclassify.R R/TxD.R R/getbootstrapdata.R README.md

data/AllEvents_RNASeq.rda

data/AllEvents_RNASeq_MP.rda

data/ArrayDatamultipath.rda

data/ArraysData.rda

data/EventXtrans.rda

data/Fit.rda

data/MyPrimers.rda

data/MyPrimers_taqman.rda

data/PSIss.rda

data/SG_RNASeq.rda

data/SG_reclassify.rda

data/TxD.rda

inst/.DS_Store

inst/CITATION

inst/extdata/DONSON.gtf

inst/extdata/EventsFound.txt

inst/extdata/EventsFound_Gencode24_2genes.txt

inst/extdata/EventsFound_RNASeq.txt

inst/extdata/Events_found_class.txt

inst/extdata/FBXO31.gtf

inst/extdata/Junction_Probes.txt

inst/extdata/PSR_Probes.txt

inst/extdata/example_recla_events.gtf

inst/extdata/example_recla_genes.gtf

inst/extdata/gencode.v24.ann_2genes.gtf

inst/extdata/output/ERR315326/abundance.h5

inst/extdata/output/ERR315326/abundance.tsv

inst/extdata/output/ERR315326/run_info.json

inst/extdata/output/ERR315400/abundance.h5

inst/extdata/output/ERR315400/abundance.tsv

inst/extdata/output/ERR315400/run_info.json

inst/extdata/output/ERR315407/abundance.h5

inst/extdata/output/ERR315407/abundance.tsv

inst/extdata/output/ERR315407/run_info.json

inst/extdata/output/ERR315494/abundance.h5

inst/extdata/output/ERR315494/abundance.tsv

inst/extdata/output/ERR315494/run_info.json

src/dgl.c

src/gldist.h

src/params.c

src/pgl.c

src/qdgl.c

src/qgl.c

src/rgl.c

tests/runTests.R

vignettes/Esquema_bis.png

vignettes/EventPointer.Rmd

vignettes/Figure1.png

vignettes/Figure10.png

vignettes/Figure11.png

vignettes/Figure2.png

vignettes/Figure3.png

vignettes/Figure5.png

vignettes/Figure6.png

vignettes/Figure7_2.png

vignettes/Figure8.png

vignettes/Figure9.png

vignettes/Romero_Fig1.png

vignettes/Thumbs.db

vignettes/example3_ce.png

vignettes/example_1_alt5_ce.png

vignettes/example_2_multiple_exon_skipping.png

vignettes/example_4_ri_ce.png

vignettes/example_5_ce_alt3.png

jpromeror/EventPointer documentation built on May 17, 2023, 10:29 p.m.

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jpromeror/EventPointer
An effective identification of alternative splicing events using junction arrays and RNA-Seq data

Files in jpromeror/EventPointer
An effective identification of alternative splicing events using junction arrays and RNA-Seq data

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jpromeror/EventPointer An effective identification of alternative splicing events using junction arrays and RNA-Seq data

Files in jpromeror/EventPointer An effective identification of alternative splicing events using junction arrays and RNA-Seq data

R Package Documentation

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We want your feedback!

jpromeror/EventPointer
An effective identification of alternative splicing events using junction arrays and RNA-Seq data

Files in jpromeror/EventPointer
An effective identification of alternative splicing events using junction arrays and RNA-Seq data