getbootstrapdata: getbootstrapdata

In jpromeror/EventPointer: An effective identification of alternative splicing events using junction arrays and RNA-Seq data

getbootstrapdata

Description

Function to load the values of the bootstrap returned by kallisto or salmon pseudoaligners.

Usage

getbootstrapdata(PathSamples, type)

Arguments

PathSamples	A vector with the complete directory to the folder of the output of kallisto/salmon.
type	'kallisto' or 'salmon'.

Value

A list containing the quantification data with the bootstrap information.

Examples

       PathSamples<-system.file("extdata",package="EventPointer")
       PathSamples <- paste0(PathSamples,"/output")
       PathSamples <- dir(PathSamples,full.names = TRUE)
       
       data_exp <- getbootstrapdata(PathSamples = PathSamples,type = "kallisto")

jpromeror/EventPointer documentation built on May 17, 2023, 10:29 p.m.