CreateExSmatrix: Events X RBPS matrix creation

In jpromeror/EventPointer: An effective identification of alternative splicing events using junction arrays and RNA-Seq data

Events X RBPS matrix creation

Description

Generates the Events x RBP matrix for the splicing factor enrichment analysis.

Usage

CreateExSmatrix(
  pathtoeventstable,
  SG_List,
  nt = 400,
  Peaks,
  POSTAR,
  EventsRegions = NULL,
  cores = 1
)

Arguments

pathtoeventstable	Path to eventsFound.txt with the information of all the events
SG_List	List with the information of the splicing graph of the genes. Returned by the funciotn EventDetectio_transcriptome
nt	Number of nt up and down for the splicing regions of each event
Peaks	Table with the peaks
POSTAR	Table with peaks of POSTAR
EventsRegions	Events regions if calculated prevously. Not need to calculated again.
cores	Number of cores if user want to run in parallel.

Value

The function returns a list with the ExS matrix and with the splicing regions of the events. If the Splicign regions is an input of the function then only the ExS matrix will be returned. The ExS matrix is the input for the Splicing Factor enrichment analysis.

jpromeror/EventPointer documentation built on May 17, 2023, 10:29 p.m.