Files in ilyessr/conclus

ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion

NEWS.md R/AllClasses.R R/AllGenerics.R R/DataFormatting.R R/checkFunctions.R R/constructors.R R/getters.R R/globalVar.R R/loadDataset.R R/methods-clustering.R R/methods-dbscan.R R/methods-export.R R/methods-markers.R R/methods-normalization.R R/methods-plot.R R/methods-tsne.R R/runCONCLUS.R R/setters.R R/sharedInternals.R inst/script/all_generate.R inst/script/generate_clusters_table.R inst/script/generate_colData.R inst/script/generate_countMatrix.R inst/script/generate_expected_normalizedMatrix.R inst/script/generate_rowData.R inst/script/generate_scrFull.R inst/script/generate_scrLight.R man/Dbscan-class.Rd man/Tsne-class.Rd man/addClustering-scRNAseq.Rd man/calculateClustersSimilarity-scRNAseq.Rd man/clusterCellsInternal-scRNAseq.Rd man/conclusCacheClear.Rd man/constructors.Rd man/exportResults-scRNAseq.Rd man/generateTSNECoordinates-scRNAseq.Rd man/getters.Rd man/loadDataOrMatrix.Rd man/normaliseCountMatrix-scRNAseq.Rd man/plotCellHeatmap.Rd man/plotCellSimilarity-scRNAseq.Rd man/plotClusteredTSNE-scRNAseq.Rd man/plotClustersSimilarity.Rd man/plotGeneExpression-scRNAseq.Rd man/rankGenes-scRNAseq.Rd man/retrieveFromGEO.Rd man/retrieveGenesInfo-scRNAseq.Rd man/retrieveTableClustersCells-scRNAseq.Rd man/retrieveTopClustersMarkers-scRNAseq.Rd man/runCONCLUS.Rd man/runDBSCAN-scRNAseq.Rd man/scRNAseq-class.Rd man/setters.Rd man/testClustering-scRNAseq.Rd tests/test-all.R tests/testthat/test_getters.R tests/testthat/test_loadData.R tests/testthat/test_scRNAseq-methods.R tests/testthat/test_setters.R vignettes/conclus_vignette.Rmd