retrieveTableClustersCells-scRNAseq: retrieveTableClustersCells

In ilyessr/conclus: ScRNA-seq Workflow CONCLUS - From CONsensus CLUSters To A Meaningful CONCLUSion

retrieveTableClustersCells

Description

Having computed clusterCellsInternal, retrieve to what cluster each cell belongs. The output data.frame can be passed to the method ?addClustering.

Usage

retrieveTableClustersCells(theObject)

Arguments

theObject

An Object of class scRNASeq for which the cells were clustered internally. See ?clusterCellsInternal.

Value

A data frame containing two columns 'clusters' and 'cells' indicating the result of the consensus clustering at the cellular level.

Author(s)

Nicolas DESCOSTES.

See Also

addClustering

Examples

## Object scr containing the results of previous steps
load(system.file("extdata/scrFull.Rdat", package="conclus"))

## Retrieving the table clusters-cells.
cellClustDf <- retrieveTableClustersCells(scr)

ilyessr/conclus documentation built on April 8, 2022, 1:43 p.m.