setBioMatrixPlotParameters: Set up Plot Parameters for caOmicsV bioMatrix Layout

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Put biomatrix plot parameters to CA_OMICS_ENV environment. All arguments should be validated outside in advance. This function is for internal use only.

Usage

    setBioMatrixPlotParameters(numOfGenes, numOfSamples, numOfPhenotypes, 
            sampleHeight, sampleWidth, columnPadding, rowPadding, 
            geneNameWidth, remarkWidth, summaryWidth, sampleNameHeight, 
            legendHeight)

Arguments

numOfGenes	non-negative integer, total number of genes to be plotted
numOfSamples	non-negative integer, total number of samples to be plotted
numOfPhenotypes	non-negative integer, total number of phenotypes to be plotted
sampleHeight	non-negative numeric, height of polygon (sample) in inch on each row
sampleWidth	non-negative numeric, width of polygon (sample) in inch on each row
columnPadding	non-negative numeric, padding width in inch between two polygons (samples)
rowPadding	non-negative numeric, padding height in inch between two rows
geneNameWidth	non-negative numeric, width of left text plot area in inch for gene names
remarkWidth	non-negative numeric, width of plot area in inch for right side text plot (second set of gene names) and/or summary data plot
summaryWidth	non-negative numeric, width of plot area in inch on right side of data plot area for summary info plot
sampleNameHeight	non-negative numeric, height of plot area in inch for sample names
legendHeight	non-negative numeric, height of legend area

Value

None

Author(s)

Henry Zhang

Examples

    #  Internal use only

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.