plotBioMatrixHeatmap: Heatmap Plot on caOmicsV bioMatrix Layout
In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description Usage Arguments Value Author(s) Examples

Headmap plot method for bioMatrix layout. This function will plot all rows of the input data. bioMatrix layout and graphic device must be initialized first.

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    plotBioMatrixHeatmap(exprData, topAdjust=0, bottomAdjust=0, 
            maxValue=NULL, minValue=NULL, 
            heatmapColor="BlueWhiteRed", skipPlotRow=0)

`exprData`	numeric matrix (log2 values) with row names
`topAdjust`	non-negative numeric, height of top y coordinate should be reduced to show different layers, default 0
`bottomAdjust`	non-negative numeric, height of bottom y coordinate should be reduced for a small rectangle, default 0
`maxValue`	numeric, value for highest color in heatmap, set to NULL to use the maximum value in expression dataset
`minValue`	numeric, value for lowest color in heatmap, set to NULL to use the minimum value in expression dataset
`heatmapColor`	character vector,one of "BlueWhiteRed", "GreenWhiteRed", "GreenYellowRed", "GreenBlackRed" , or "YellowToRed"
`skipPlotRow`	non-negative integer, total rows on plot area that should be skipped, default 0

None

Henry Zhang

    initializeBioMatrixPlot(numOfGenes=1, numOfSamples=50)
    showBioMatrixPlotLayout("Gene", paste("Sample", 1:50),  "Diagnosis")

    data(biomatrixPlotDemoData)
    exprData <- biomatrixPlotDemoData$heatmapData[[1]]
    exprData <- matrix(exprData[1, 1:50], nrow=1)
    plotBioMatrixHeatmap(exprData, maxValue=3, minValue=-3)