biomatrixPlotDemoData: Demo Data for caOmicsV bioMatrix Plot

In hzhanghenry/caOmicsV: Visualization of multi-dimentional cancer genomics data

Description

Data for demo of caOmicsV bioMatrix Plot

Usage

data("biomatrixPlotDemoData")

Format

The format is: List of 8

$ sampleNames: chr [1:60] "BC.A216.Normal" "BD.A2L6.Normal" "BD.A3EP.Normal" "DD.A113.Normal" ...

$ geneNames: chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ...

$ secondGeneNames: chr [1:26] "hsa-mir-10b" "hsa-mir-139" "hsa-mir-10b" "hsa-mir-10b" ...

$ sampleInfo: chr [1:2, 1:60] "TCGA.BC.A216.Normal" "Solid Tissue Normal" "TCGA.BD.A2L6.Normal" "Solid Tissue Normal" ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:2] "sampleID" "sample_type" .. ..$ : chr [1:60] "TCGA.BC.A216.Normal" "TCGA.BD.A2L6.Normal" "TCGA.BD.A3EP.Normal" "TCGA.DD.A113.Normal" ...

$ heatmapData :List of 2 ..$ : num [1:26, 1:60] 1.157 -0.623 0.667 0.976 0.868 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. .. ..$ : chr [1:60] "TCGA.BC.A216.Normal" "TCGA.BD.A2L6.Normal" "TCGA.BD.A3EP.Normal" "TCGA.DD.A113.Normal" ...

..$ : num [1:26, 1:60] -1.5 1.08 -1.5 -1.5 -1.5 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. .. ..$ : chr [1:60] "TCGA.BC.A216.Normal" "TCGA.BD.A2L6.Normal" "TCGA.BD.A3EP.Normal" "TCGA.DD.A113.Normal" ...

$ categoryData :List of 1 ..$ : num [1:26, 1:60] 1 0 1 1 1 0 0 0 1 0 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. .. ..$ : chr [1:60] "TCGA.BC.A216.Normal" "TCGA.BD.A2L6.Normal" "TCGA.BD.A3EP.Normal" "TCGA.DD.A113.Normal" ...

$ binaryData :List of 2 ..$ : num [1:26, 1:60] 0 0 0 0 0 0 0 0 0 0 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. .. ..$ : chr [1:60] "TCGA.BC.A216.Normal" "TCGA.BD.A2L6.Normal" "TCGA.BD.A3EP.Normal" "TCGA.DD.A113.Normal" ...

..$ : num [1:26, 1:60] 0 0 0 0 0 0 0 0 0 0 ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. .. ..$ : chr [1:60] "TCGA.BC.A216.Normal" "TCGA.BD.A2L6.Normal" "TCGA.BD.A3EP.Normal" "TCGA.DD.A113.Normal" ...

$ summaryInfo :List of 1 ..$ : chr [1:26, 1:2] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. ..- attr(*, "dimnames")=List of 2 .. .. ..$ : chr [1:26] "ECM1" "SLC26A6" "ADAMTS13" "FCN3" ... .. .. ..$ : chr [1:2] "GeneSymbol" "logFC"

Value

None

Examples

    data("caOmicsV.biomatrix.eset")

hzhanghenry/caOmicsV documentation built on May 17, 2019, 10:07 p.m.