simulate_causal_snps: Simulate causal SNPs
In hclimente/martini: GWAS Incorporating Networks
simulate_causal_snps R Documentation
Simulate causal SNPs
Description
Selects randomly interconnected genes as causal, then selects a
proportion of them as causal.
Usage
simulate_causal_snps(net, ngenes = 20, pcausal = 1)
Arguments
net
An igraph gene-interaction (GI) network that connects the SNPs.
ngenes
Number of causal genes.
pcausal
Number between 0 and 1, proportion of the SNPs in causal genes
that are causal themselves.
Value
A vector with the ids of the simulated causal SNPs.
Examples
gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
simulate_causal_snps(gi, ngenes=2)
hclimente/martini documentation built on Feb. 26, 2024, 6:23 p.m.
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| simulate_causal_snps | R Documentation |
Simulate causal SNPs
Description
Selects randomly interconnected genes as causal, then selects a proportion of them as causal.
Usage
simulate_causal_snps(net, ngenes = 20, pcausal = 1)
Arguments
net |
An igraph gene-interaction (GI) network that connects the SNPs. |
ngenes |
Number of causal genes. |
pcausal |
Number between 0 and 1, proportion of the SNPs in causal genes that are causal themselves. |
Value
A vector with the ids of the simulated causal SNPs.
Examples
gi <- get_GI_network(minigwas, snpMapping = minisnpMapping, ppi = minippi)
simulate_causal_snps(gi, ngenes=2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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