get_GS_network: Get genomic sequence network
In hclimente/martini: GWAS Incorporating Networks
get_GS_network R Documentation
Get genomic sequence network
Description
Creates a network of SNPs where each SNP is connected to its
adjacent SNPs in the genome sequence. Corresponds to the genomic sequence
(GS) network described by Azencott et al.
Usage
get_GS_network(gwas)
Arguments
gwas
A SnpMatrix object with the GWAS information.
Value
An igraph network of the GS network of the SNPs.
References
Azencott, C. A., Grimm, D., Sugiyama, M., Kawahara, Y., &
Borgwardt, K. M. (2013). Efficient network-guided multi-locus association
mapping with graph cuts. Bioinformatics, 29(13), 171-179.
https://doi.org/10.1093/bioinformatics/btt238
Examples
get_GS_network(minigwas)
hclimente/martini documentation built on Feb. 26, 2024, 6:23 p.m.
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| get_GS_network | R Documentation |
Get genomic sequence network
Description
Creates a network of SNPs where each SNP is connected to its adjacent SNPs in the genome sequence. Corresponds to the genomic sequence (GS) network described by Azencott et al.
Usage
get_GS_network(gwas)
Arguments
gwas |
A SnpMatrix object with the GWAS information. |
Value
An igraph network of the GS network of the SNPs.
References
Azencott, C. A., Grimm, D., Sugiyama, M., Kawahara, Y., & Borgwardt, K. M. (2013). Efficient network-guided multi-locus association mapping with graph cuts. Bioinformatics, 29(13), 171-179. https://doi.org/10.1093/bioinformatics/btt238
Examples
get_GS_network(minigwas)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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