Files in hclimente/martini

GWAS Incorporating Networks

R/NAMESPACE_exports.R R/RcppExports.R R/datasets.R R/db.R R/ld.R R/legacy.R R/networks.R R/nongwas.R R/scones.R R/sigmod.R R/simulation.R R/utils.R R/viz.R README.md man-roxygen/params_X.R man-roxygen/params_c.R man-roxygen/params_col_genes.R man-roxygen/params_covars.R man-roxygen/params_criterion.R man-roxygen/params_eta.R man-roxygen/params_etas.R man-roxygen/params_family.R man-roxygen/params_featnames.R man-roxygen/params_flush.R man-roxygen/params_genome.R man-roxygen/params_gwas.R man-roxygen/params_lambda.R man-roxygen/params_lambdas.R man-roxygen/params_link.R man-roxygen/params_max_prop_snp.R man-roxygen/params_net.R man-roxygen/params_organism.R man-roxygen/params_scones.R man-roxygen/params_score.R man-roxygen/params_snpMapping.R man-roxygen/params_y.R man-roxygen/reference_azencott.R man-roxygen/return_cones.R man/arrange_covars.Rd man/calculateE.Rd man/calculateG.Rd man/check_installed.Rd man/connect_biomart.Rd man/get_GI_network.Rd man/get_GM_network.Rd man/get_GS_network.Rd man/get_adjacency.Rd man/get_grid.Rd man/get_gxg.Rd man/get_gxg_biogrid.Rd man/get_gxg_string.Rd man/get_snp_modules.Rd man/group_snps.Rd man/gwas2bed.Rd man/is_coherent.Rd man/ldweight_edges.Rd man/maxflow.Rd man/mget_gxg_biogrid.Rd man/mget_gxg_string.Rd man/mincut.Rd man/mincut.cv.Rd man/mincut_c.Rd man/minigwas.Rd man/minippi.Rd man/minisnpMapping.Rd man/organism_id2name.Rd man/permute_snpMatrix.Rd man/plot_ideogram.Rd man/sanitize_map.Rd man/sanitize_snpMapping.Rd man/scones.Rd man/scones.cv.Rd man/scones.cv_.Rd man/scones_.Rd man/score_fold.Rd man/search_cones.Rd man/sigmod.Rd man/sigmod.cv.Rd man/sigmod.cv_.Rd man/sigmod_.Rd man/simulate_causal_snps.Rd man/simulate_phenotype.Rd man/snp2ensembl.Rd man/snp_test.Rd man/subnet.Rd man/subset_snpMatrix.Rd man/subvert.Rd man/wrap_Xy.Rd tests/testthat.R tests/testthat/helper_minimum_data.R tests/testthat/helper_skips.R tests/testthat/helper_test_data.R tests/testthat/test_calculateE.R tests/testthat/test_calculateG.R tests/testthat/test_check_installed.R tests/testthat/test_connect_biomart.R tests/testthat/test_get_GI_network.R tests/testthat/test_get_GM_network.R tests/testthat/test_get_GS_network.R tests/testthat/test_get_grid.R tests/testthat/test_get_gxg.R tests/testthat/test_get_gxg_biogrid.R tests/testthat/test_get_gxg_string.R tests/testthat/test_get_snp_modules.R tests/testthat/test_group_snps.R tests/testthat/test_is_coherent.R tests/testthat/test_ldweight_edges.R tests/testthat/test_legacy.R tests/testthat/test_mincut_c.R tests/testthat/test_organism_id2name.R tests/testthat/test_plot_ideogram.R tests/testthat/test_sanitize_snpMapping.R tests/testthat/test_scones.R tests/testthat/test_scones.cv.R tests/testthat/test_scones.cv_.R tests/testthat/test_scones_.R tests/testthat/test_score_fold.R tests/testthat/test_sigmod.R tests/testthat/test_sigmod.cv.R tests/testthat/test_sigmod.cv_.R tests/testthat/test_sigmod_.R tests/testthat/test_simulate_causal_snps.R tests/testthat/test_simulate_phenotype.R tests/testthat/test_snp2ensembl.R tests/testthat/test_snp_test.R tests/testthat/test_subnet.R tests/testthat/test_subvert.R tests/testthat/test_wrapXy.R vignettes/scones_usage.R vignettes/scones_usage.Rmd vignettes/simulate_phenotype.R vignettes/simulate_phenotype.Rmd