check.genotype: Check genotype
In guigolab/sQTLseekeR2: R package for splicing QTL mapping
Description
Usage
Arguments
Value
Author(s)
Description
Labels SNPs according to their suitability for sQTL mapping.
Usage
1
check.genotype(geno.df, tre.df, min.nb.ind.geno = 10)
Arguments
geno.df
a data.frame of genotypes produced by read.bedix.
tre.df
a data.frame with transcript relative expression values
produced by prepare.trans.exp corresponding to one gene.
Value
A character vector of SNP suitabilities. Possible labels:
"Missing genotype" (more than 3 missing genotype values)
"Only one genotype group"
"Not all the groups with >10 samples"
"Not all the groups with >5 different splicing patterns"
"PASS"
Author(s)
Jean Monlong, Diego Garrido-Martín
guigolab/sQTLseekeR2 documentation built on Nov. 20, 2021, 3:21 a.m.
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Description Usage Arguments Value Author(s)
Description
Labels SNPs according to their suitability for sQTL mapping.
Usage
1 | check.genotype(geno.df, tre.df, min.nb.ind.geno = 10)
|
Arguments
geno.df |
a data.frame of genotypes produced by |
tre.df |
a data.frame with transcript relative expression values
produced by |
Value
A character vector of SNP suitabilities. Possible labels:
"Missing genotype" (more than 3 missing genotype values) |
|
"Only one genotype group" |
|
"Not all the groups with >10 samples" |
|
"Not all the groups with >5 different splicing patterns" |
|
"PASS" |
Author(s)
Jean Monlong, Diego Garrido-Martín
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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