trueSNVs: Example .bam data and true SNVs.
In gerstung-lab/deepSNV: Detection of subclonal SNVs in deep sequencing data.
trueSNVs R Documentation
Example .bam data and true SNVs.
Description
Two .bam alignments as example data sets are downloaded remotely via http. Sequenced were a 1,512 nt fragment of the HIV genome and a mixture (90% + 10%) with another variants.
The two sequences were confirmed by Sanger sequencing and stored in the table trueSNVs.
Examples
data(HIVmix)
data(trueSNVs)
table(p.adjust(p.val(HIVmix), method="BH") < 0.05, trueSNVs)
gerstung-lab/deepSNV documentation built on June 3, 2022, 3:05 p.m.
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| trueSNVs | R Documentation |
Example .bam data and true SNVs.
Description
Two .bam alignments as example data sets are downloaded remotely via http. Sequenced were a 1,512 nt fragment of the HIV genome and a mixture (90% + 10%) with another variants. The two sequences were confirmed by Sanger sequencing and stored in the table trueSNVs.
Examples
data(HIVmix) data(trueSNVs) table(p.adjust(p.val(HIVmix), method="BH") < 0.05, trueSNVs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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