counts: Example count table
In gerstung-lab/deepSNV: Detection of subclonal SNVs in deep sequencing data.
counts R Documentation
Example count table
Description
A table with counts of the HIVmix data set. Used for minimal unit testing.
Examples
data("counts", package="deepSNV")
countsFromBam <- bam2R(file = system.file("extdata", "test.bam", package="deepSNV"), chr="B.FR.83.HXB2_LAI_IIIB_BRU_K034", start = 3120, stop=3140, q = 10)
all(counts == countsFromBam)
gerstung-lab/deepSNV documentation built on June 3, 2022, 3:05 p.m.
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| counts | R Documentation |
Example count table
Description
A table with counts of the HIVmix data set. Used for minimal unit testing.
Examples
data("counts", package="deepSNV")
countsFromBam <- bam2R(file = system.file("extdata", "test.bam", package="deepSNV"), chr="B.FR.83.HXB2_LAI_IIIB_BRU_K034", start = 3120, stop=3140, q = 10)
all(counts == countsFromBam)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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