Files in fursham-h/factR
Functional Annotation of Custom Transcriptomes
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/buildCDS.R
R/data.R
R/eachfunctions.R
R/has_consistentSeqLevels.R
R/import.R
R/is_gtf.R
R/matchChromosomes.R
R/matchGeneInfo.R
R/predictDomains.R
R/predictNMD.R
R/subsettranscripts.R
R/trimTranscripts.R
R/viewTranscripts.R
README.md
_pkgdown.yml
codecov.yml
data/chrom_matched_query_gtf.rda
data/domains.known.rda
data/domains.out.rda
data/matched_query_gtf.rda
data/new_query_gtf.rda
data/query_cds.rda
data/query_exons.rda
data/query_gtf.rda
data/ref_cds.rda
data/ref_exons.rda
data/ref_gtf.rda
inst/extdata/sc_merged_sample.gtf.gz
inst/scripts/ReadMe_extdata.md
inst/scripts/download_assemble_sc.sh
inst/scripts/sc_fastq_curated.txt
man/buildCDS.Rd
man/chrom_matched_query_gtf.Rd
man/domains.known.Rd
man/domains.out.Rd
man/figures/factR_workflow.png
man/filtereach.Rd
man/has_consistentSeqlevels.Rd
man/importFASTA.Rd
man/importGTF.Rd
man/matchChromosomes.Rd
man/matchGeneInfo.Rd
man/matched_query_gtf.Rd
man/mutateeach.Rd
man/new_query_gtf.Rd
man/predictDomains.Rd
man/predictNMD.Rd
man/query_cds.Rd
man/query_exons.Rd
man/query_gtf.Rd
man/ref_cds.Rd
man/ref_exons.Rd
man/ref_gtf.Rd
man/sorteach.Rd
man/subsetNewTranscripts.Rd
man/trimTranscripts.Rd
man/viewTranscripts.Rd
tests/testthat.R
tests/testthat/test_buildCDS.R
tests/testthat/test_each.R
tests/testthat/test_io.R
tests/testthat/test_is_gtf.R
tests/testthat/test_matchings.R
tests/testthat/test_predictDomains.R
tests/testthat/test_predictNMD.R
tests/testthat/test_resizeTranscripts.R
tests/testthat/test_subsettranscripts.R
vignettes/factR.Rmd
vignettes/references.bib
