matched_query_gtf: Seqlevels and gene_id matched query data
In fursham-h/factR: Functional Annotation of Custom Transcriptomes
matched_query_gtf R Documentation
Seqlevels and gene_id matched query data
Description
query_gtf data which have been corrected for its seqlevels and gene_ids
Usage
data(matched_query_gtf)
Format
A GRanges object with 56 ranges and 6 metadata columns:
- ranges
Chromosome, start, end, and strand info of 4 transcripts
and its exons
- type
Entry type; transcript or exon
- transcript_id
ID given to transcripts
- gene_id
Matched gene_id
- old_gene_id
Original gene_id
- match_level
Level of matching performed
- gene_name
Name of gene
...
fursham-h/factR documentation built on Aug. 20, 2023, 1:58 p.m.
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| matched_query_gtf | R Documentation |
Seqlevels and gene_id matched query data
Description
query_gtf data which have been corrected for its seqlevels and gene_ids
Usage
data(matched_query_gtf)
Format
A GRanges object with 56 ranges and 6 metadata columns:
- ranges
Chromosome, start, end, and strand info of 4 transcripts and its exons
- type
Entry type; transcript or exon
- transcript_id
ID given to transcripts
- gene_id
Matched gene_id
- old_gene_id
Original gene_id
- match_level
Level of matching performed
- gene_name
Name of gene
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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