plot_volcano_basic: Plot basic volcano

Description Usage Arguments

View source: R/plot_volcano_basic.R

Description

takes in a data.frane with the columns gene, logFC, pvalue and significant to draw a volcano. Optionally, a column indicating 'color' (string) can be supplied to indicate the volcano color scheme and whether to draw names of specific proteins.

Usage

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plot_volcano_basic(
  df,
  col_significant = "#41AB5D",
  col_other = "grey",
  gg.size = 3
)

Arguments

df

a data.frame with at least columns gene, logFC, pvalue and significant.

col_significant

the color of significant proteins/rows.

col_other

the color of non-significnt proteins/rows.

gg.size

the size of the points.


frhl/genoppi-v4 documentation built on May 5, 2020, 7:16 a.m.