id_enriched_proteins: Identify enriched proteins
In frhl/genoppi-v4: genoppi
Description
Usage
Arguments
Value
View source: R/id_enriched_proteins.R
Description
Identify enriched proteins based in input thresholds.
Usage
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id_enriched_proteins(
df,
logfc_dir = "positive",
logfc_cutoff = NULL,
p_cutoff = NULL,
fdr_cutoff = 0.1
)
Arguments
df
data.frame contaiing logFC, pvalue, and FDR columns
logfc_dir
string indicating direction of logFC cutoff ("positive" or "negative")
logfc_cutoff
numeric value indicating logFC cutoff
p_cutoff
numeric value indicating pvalue cutoff
fdr_cutoff
numeric value indicating FDR cutoff
Value
data.frame containing df + signficanct column of boolean values indicating which df rows (proteins) are enriched
frhl/genoppi-v4 documentation built on May 5, 2020, 7:16 a.m.
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Description Usage Arguments Value
View source: R/id_enriched_proteins.R
Description
Identify enriched proteins based in input thresholds.
Usage
1 2 3 4 5 6 7 | id_enriched_proteins(
df,
logfc_dir = "positive",
logfc_cutoff = NULL,
p_cutoff = NULL,
fdr_cutoff = 0.1
)
|
Arguments
df |
data.frame contaiing logFC, pvalue, and FDR columns |
logfc_dir |
string indicating direction of logFC cutoff ("positive" or "negative") |
logfc_cutoff |
numeric value indicating logFC cutoff |
p_cutoff |
numeric value indicating pvalue cutoff |
fdr_cutoff |
numeric value indicating FDR cutoff |
Value
data.frame containing df + signficanct column of boolean values indicating which df rows (proteins) are enriched
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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