get_gwas_lists: Retreive GWAS catalog data for a given list of traits
In frhl/genoppi-v4: genoppi
Description
Usage
Arguments
Value
View source: R/get_gwas_lists.R
Description
Create gene list data.frame from input traits
Usage
1
get_gwas_lists(traits, genes)
Arguments
traits
vector of GWAS catalog traits. See gwas_table$DISEASE.TRAIT
genes
vector of gene names (genes detected in proteomic data)
Value
data.frame containing GWAS catalog info (PUBMEDID, DISEASE.TRAIT, SNP, P.VALUE, STUDY.ACCESSION) + MAPPED_GENE columns (restricting to traits and genes in input vectors)
frhl/genoppi-v4 documentation built on May 5, 2020, 7:16 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/get_gwas_lists.R
Description
Create gene list data.frame from input traits
Usage
1 | get_gwas_lists(traits, genes)
|
Arguments
traits |
vector of GWAS catalog traits. See |
genes |
vector of gene names (genes detected in proteomic data) |
Value
data.frame containing GWAS catalog info (PUBMEDID, DISEASE.TRAIT, SNP, P.VALUE, STUDY.ACCESSION) + MAPPED_GENE columns (restricting to traits and genes in input vectors)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.