| .adjustLayoutByPtime |
Man page
Source code
|
| .bhtsne |
Man page
Source code
|
| .capitalize |
Man page
Source code
|
| .color_hue |
Man page
Source code
|
| .color_ramp |
Man page
Source code
|
| .connectStates_def |
Man page
Source code
|
| .connect_ordi |
Man page
Source code
|
| .connect_ortho |
Man page
Source code
|
| .contrastExprTrail_def |
Man page
Source code
|
| .deleteMedianCentres |
Man page
Source code
|
| .denoiseExpression |
Man page
Source code
|
| .diffExpr |
Man page
Source code
|
| .diffExprState_def |
Man page
Source code
|
| .embedSamples_def |
Man page
Source code
|
| .exprs |
Man page
|
| .exprs,SingleCellExperiment-method |
Man page
|
| .featureNameExists |
Man page
Source code
|
| .filterTrajFeaturesByCOV_def |
Man page
Source code
|
| .filterTrajFeaturesByDL_def |
Man page
Source code
|
| .filterTrajFeaturesByFF_def |
Man page
Source code
|
| .findSpectrum_def |
Man page
Source code
|
| .findStates_def |
Man page
Source code
|
| .fitDynamic_def |
Man page
Source code
|
| .fitTrajectory_def |
Man page
Source code
|
| .fit_surface |
Man page
Source code
|
| .fr_layout |
Man page
Source code
|
| .generate_ordination |
Man page
Source code
|
| .ihs |
Man page
Source code
|
| .linear_fit |
Man page
Source code
|
| .needsToBeExpanded |
Man page
Source code
|
| .nn_impute |
Man page
Source code
|
| .pca_def |
Man page
Source code
|
| .pheno |
Man page
|
| .pheno,SingleCellExperiment-method |
Man page
|
| .phenoNameExists |
Man page
Source code
|
| .plotDynamic |
Man page
Source code
|
| .plotManifold_def |
Man page
Source code
|
| .plotSpectrum_def |
Man page
Source code
|
| .plotStateExpression_def |
Man page
Source code
|
| .plotStateSize_def |
Man page
Source code
|
| .plotStateTrajectory_def |
Man page
Source code
|
| .plotTrail_def |
Man page
Source code
|
| .plotTrailblazing_def |
Man page
Source code
|
| .plot_trajectoryFit |
Man page
Source code
|
| .prettyColorRamp |
Man page
Source code
|
| .prettyString |
Man page
Source code
|
| .project_ortho |
Man page
Source code
|
| .rbf |
Man page
Source code
|
| .rescale |
Man page
Source code
|
| .sampleNameExists |
Man page
Source code
|
| .spanForest |
Man page
|
| .spanForest,SingleCellExperiment-method |
Man page
|
| .spanForest<- |
Man page
|
| .spanForest<-,SingleCellExperiment-method |
Man page
|
| .spatmed |
Man page
|
| .stateTrajLayout |
Man page
|
| .stateTrajLayout,SingleCellExperiment-method |
Man page
|
| .trailNameExists |
Man page
Source code
|
| .trajGraph |
Man page
|
| .trajGraph,SingleCellExperiment-method |
Man page
|
| .trajGraph<- |
Man page
|
| .trajGraph<-,SingleCellExperiment-method |
Man page
|
| .trajLandmark |
Man page
|
| .trajLandmark,SingleCellExperiment-method |
Man page
|
| .trajLandmark<- |
Man page
|
| .trajLandmark<-,SingleCellExperiment-method |
Man page
|
| .trajResiduals<- |
Man page
|
| .trajResiduals<-,SingleCellExperiment-method |
Man page
|
| .useFeature |
Man page
|
| .useFeature,SingleCellExperiment-method |
Man page
|
| .useFeature<- |
Man page
|
| .useFeature<-,SingleCellExperiment-method |
Man page
|
| .useSample |
Man page
|
| .useSample,SingleCellExperiment-method |
Man page
|
| .useSample<- |
Man page
|
| .validatePlotParams |
Man page
Source code
|
| .write_ygraphml_def |
Man page
Source code
|
| addTrail |
Man page
|
| addTrail,SingleCellExperiment-method |
Man page
|
| connectStates |
Man page
|
| connectStates,SingleCellExperiment-method |
Man page
|
| contrastTrailExpr |
Man page
|
| contrastTrailExpr,SingleCellExperiment-method |
Man page
|
| embedSamples |
Man page
|
| embedSamples,SingleCellExperiment-method |
Man page
|
| embedSamples,matrix-method |
Man page
|
| enrichment.test |
Man page
Source code
|
| exSCE |
Man page
|
| featureNames,SingleCellExperiment-method |
Man page
|
| filterTrajFeaturesByCOV |
Man page
|
| filterTrajFeaturesByCOV,SingleCellExperiment-method |
Man page
|
| filterTrajFeaturesByDL |
Man page
|
| filterTrajFeaturesByDL,SingleCellExperiment-method |
Man page
|
| filterTrajFeaturesByFF |
Man page
|
| filterTrajFeaturesByFF,SingleCellExperiment-method |
Man page
|
| findSpectrum |
Man page
|
| findSpectrum,numeric-method |
Man page
|
| findStates |
Man page
|
| findStates,SingleCellExperiment-method |
Man page
|
| fitDynamic |
Man page
|
| fitDynamic,SingleCellExperiment-method |
Man page
|
| fitTrajectory |
Man page
|
| fitTrajectory,SingleCellExperiment-method |
Man page
|
| landmarks |
Man page
|
| landmarks,SingleCellExperiment-method |
Man page
|
| latentSpace |
Man page
|
| latentSpace,SingleCellExperiment-method |
Man page
|
| latentSpace<- |
Man page
|
| latentSpace<-,SingleCellExperiment-method |
Man page
|
| manifold2D |
Man page
|
| manifold2D,SingleCellExperiment-method |
Man page
|
| manifold2D<- |
Man page
|
| manifold2D<-,SingleCellExperiment-method |
Man page
|
| pca |
Man page
|
| pca,SingleCellExperiment-method |
Man page
|
| phenoNames |
Man page
|
| phenoNames,SingleCellExperiment-method |
Man page
|
| plotDynamic |
Man page
|
| plotDynamic,SingleCellExperiment-method |
Man page
|
| plotManifold |
Man page
|
| plotManifold,SingleCellExperiment-method |
Man page
|
| plotMap |
Man page
|
| plotMap,SingleCellExperiment-method |
Man page
|
| plotStateExpression |
Man page
|
| plotStateExpression,SingleCellExperiment-method |
Man page
|
| plotStateSize |
Man page
|
| plotStateSize,SingleCellExperiment-method |
Man page
|
| plotStateTrajectory |
Man page
|
| plotStateTrajectory,SingleCellExperiment-method |
Man page
|
| plotTrail |
Man page
|
| plotTrail,SingleCellExperiment-method |
Man page
|
| plotTrajectoryFit |
Man page
|
| plotTrajectoryFit,SingleCellExperiment-method |
Man page
|
| read.ygraphml |
Man page
Source code
|
| removeTrail |
Man page
|
| removeTrail,SingleCellExperiment-method |
Man page
|
| sampleNames,SingleCellExperiment-method |
Man page
|
| selectTrajectory |
Man page
|
| selectTrajectory,SingleCellExperiment-method |
Man page
|
| showTrajInfo |
Man page
|
| showTrajInfo,SingleCellExperiment-method |
Man page
|
| simulate_exprs |
Man page
Source code
|
| stateTrajLayout<- |
Man page
|
| stateTrajLayout<-,SingleCellExperiment-method |
Man page
|
| states |
Man page
|
| states,SingleCellExperiment-method |
Man page
|
| states<- |
Man page
|
| states<-,SingleCellExperiment-method |
Man page
|
| trailNames |
Man page
|
| trailNames,SingleCellExperiment-method |
Man page
|
| trailNames<- |
Man page
|
| trailNames<-,SingleCellExperiment-method |
Man page
|
| trails |
Man page
|
| trails,SingleCellExperiment-method |
Man page
|
| trajComponents |
Man page
|
| trajComponents,SingleCellExperiment-method |
Man page
|
| trajFeatureNames |
Man page
|
| trajFeatureNames,SingleCellExperiment-method |
Man page
|
| trajFeatureNames<- |
Man page
|
| trajFeatureNames<-,SingleCellExperiment-method |
Man page
|
| trajLayout |
Man page
|
| trajLayout,SingleCellExperiment-method |
Man page
|
| trajLayout<- |
Man page
|
| trajLayout<-,SingleCellExperiment-method |
Man page
|
| trajResiduals |
Man page
|
| trajResiduals,SingleCellExperiment-method |
Man page
|
| trajSampleNames |
Man page
|
| trajSampleNames,SingleCellExperiment-method |
Man page
|
| useSample<-,SingleCellExperiment-method |
Man page
|
| userLandmarks |
Man page
|
| userLandmarks,SingleCellExperiment-method |
Man page
|
| userLandmarks<- |
Man page
|
| userLandmarks<-,SingleCellExperiment-method |
Man page
|
| write.ygraphml |
Man page
|
| write.ygraphml,SingleCellExperiment-method |
Man page
|
