plotDynamic: Visualize dynamics
In elldc/CellTrails: Reconstruction, visualization and analysis of branching trajectories
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Shows dynamics of one or multiple features along a given trail
Usage
1
plotDynamic(sce, feature_name, trail_name)
Arguments
sce
A SingleCellExperiment object
feature_name
Name of one or multiple features
trail_name
Name of trail
Details
An error is thrown if the trail_name or feature_name are
unknown. The function is case-sensitiv. All available trails can be
listed by trailNames, all features with featureNames.
Value
A ggplot object
Author(s)
Daniel C. Ellwanger
See Also
addTrail trailNames featureNames
Examples
1
2
3
4
5
6
7
8
# Example data
data(exSCE)
# Plot dynamic of feature_10
plotDynamic(exSCE, trail_name="Tr1", feature_name="feature_1")
# Plot dynamic of feature_1 and feature_10
plotDynamic(exSCE, trail_name="Tr1",
feature_name=c("feature_1", "feature_10"))
elldc/CellTrails documentation built on May 16, 2020, 4:40 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Shows dynamics of one or multiple features along a given trail
Usage
1 | plotDynamic(sce, feature_name, trail_name)
|
Arguments
sce |
A |
feature_name |
Name of one or multiple features |
trail_name |
Name of trail |
Details
An error is thrown if the trail_name or feature_name are
unknown. The function is case-sensitiv. All available trails can be
listed by trailNames, all features with featureNames.
Value
A ggplot object
Author(s)
Daniel C. Ellwanger
See Also
addTrail trailNames featureNames
Examples
1 2 3 4 5 6 7 8 | # Example data
data(exSCE)
# Plot dynamic of feature_10
plotDynamic(exSCE, trail_name="Tr1", feature_name="feature_1")
# Plot dynamic of feature_1 and feature_10
plotDynamic(exSCE, trail_name="Tr1",
feature_name=c("feature_1", "feature_10"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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