dot-fitDynamic_def: Fitting dynamics
In elldc/CellTrails: Reconstruction, visualization and analysis of branching trajectories
Description
Usage
Arguments
Value
Author(s)
Description
Fits expression as a function of pseudotime using generalized
additive models
Usage
1
.fitDynamic_def(x, y, z, k = 5, n.out = NULL, x.out = NULL)
Arguments
x
Pseudotime values
y
Expression values
z
Sample states
k
Dimensions of the bases used to represent the smooth term
n.out
Number of predicted expression values within pseudotime range
x.out
Predicted expression values for given set of pseudotime values
Value
A list containing the following components:
x
Pseudotime
y
Fitted values
mod
GAM
Author(s)
Daniel C. Ellwanger
elldc/CellTrails documentation built on May 16, 2020, 4:40 a.m.
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Description Usage Arguments Value Author(s)
Description
Fits expression as a function of pseudotime using generalized additive models
Usage
1 | .fitDynamic_def(x, y, z, k = 5, n.out = NULL, x.out = NULL)
|
Arguments
x |
Pseudotime values |
y |
Expression values |
z |
Sample states |
k |
Dimensions of the bases used to represent the smooth term |
n.out |
Number of predicted expression values within pseudotime range |
x.out |
Predicted expression values for given set of pseudotime values |
Value
A list containing the following components:
|
Pseudotime |
|
Fitted values |
|
GAM |
Author(s)
Daniel C. Ellwanger
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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