plot_coverage_and_methylation_on_genome: Plot coverage and methylation for a single sample
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Plot coverage and methylation for a single sample
Usage
1
2
plot_coverage_and_methylation_on_genome(sid, chromosome = paste0("chr", 1:22),
species = "hg19", nw = 10000, ...)
Arguments
sid
a single sample id
chromosome
a vector of chromosome names
species
species
nw
number of windows
...
pass to gtrellis_layout
Details
The whole genome is segented by nw windows and mean methylation and mean CpG coverage
are visualized as two tracks.
Value
No value is returned.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1
2
# There is no example
NULL
eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Plot coverage and methylation for a single sample
Usage
1 2 | plot_coverage_and_methylation_on_genome(sid, chromosome = paste0("chr", 1:22),
species = "hg19", nw = 10000, ...)
|
Arguments
sid |
a single sample id |
chromosome |
a vector of chromosome names |
species |
species |
nw |
number of windows |
... |
pass to |
Details
The whole genome is segented by nw windows and mean methylation and mean CpG coverage
are visualized as two tracks.
Value
No value is returned.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
Examples
1 2 | # There is no example
NULL
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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