genomic_corr_nintersect: Intersections between two sets of genomic regions
In eilslabs/epic: Integrative Analysis and Visualization of Epigenomic Sequencing Data
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Intersections between two sets of genomic regions
Usage
1
genomic_corr_nintersect(query, reference, ...)
Arguments
query
genomic region 1, a GRanges object
reference
genomic region 2, a GRanges object
...
pass to countOverlaps
Details
It calculates number of regions in query that overlap with reference.
Please note this value is not equal to the number of intersections betweenn two sets of regions,
because one region in query may overlap with more than one
regions in reference
Be careful with the strand in your GRanges object!
Value
A single correlation value.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
See Also
Examples
1
2
3
gr1 = GRanges(seqnames = "chr1", ranges = IRanges(c(1, 5), c(3, 8)))
gr2 = GRanges(seqnames = "chr1", ranges = IRanges(c(2, 6), c(4, 8)))
genomic_corr_nintersect(gr1, gr2)
eilslabs/epic documentation built on May 16, 2019, 1:24 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Intersections between two sets of genomic regions
Usage
1 | genomic_corr_nintersect(query, reference, ...)
|
Arguments
query |
genomic region 1, a |
reference |
genomic region 2, a |
... |
pass to |
Details
It calculates number of regions in query that overlap with reference.
Please note this value is not equal to the number of intersections betweenn two sets of regions,
because one region in query may overlap with more than one
regions in reference
Be careful with the strand in your GRanges object!
Value
A single correlation value.
Author(s)
Zuguang Gu <z.gu@dkfz.de>
See Also
Examples
1 2 3 | gr1 = GRanges(seqnames = "chr1", ranges = IRanges(c(1, 5), c(3, 8)))
gr2 = GRanges(seqnames = "chr1", ranges = IRanges(c(2, 6), c(4, 8)))
genomic_corr_nintersect(gr1, gr2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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