whichSpike: Identify spike-in feature control sets in an SCESet object
In dynverse/scaterlegacy: Single-cell analysis toolkit for gene expression data in R
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get the names of the feature control sets that are spike-ins.
Usage
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whichSpike(object)
## S4 method for signature 'SCESet'
whichSpike(object)
Arguments
object
a SCESet object.
Value
A character vector containing the names of feature control sets
that are spike-in sets.
Author(s)
Aaron Lun
Examples
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data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset <- calculateQCMetrics(example_sceset,
feature_controls = list(ERCC = 1:40, Mito=41:50))
setSpike(example_sceset) <- "ERCC"
whichSpike(example_sceset)
dynverse/scaterlegacy documentation built on Feb. 17, 2020, 5:07 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Get the names of the feature control sets that are spike-ins.
Usage
1 2 3 4 | whichSpike(object)
## S4 method for signature 'SCESet'
whichSpike(object)
|
Arguments
object |
a |
Value
A character vector containing the names of feature control sets that are spike-in sets.
Author(s)
Aaron Lun
Examples
1 2 3 4 5 6 7 8 | data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset <- calculateQCMetrics(example_sceset,
feature_controls = list(ERCC = 1:40, Mito=41:50))
setSpike(example_sceset) <- "ERCC"
whichSpike(example_sceset)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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