filter: Return 'SCESet' with cells matching conditions.

In dynverse/scaterlegacy: Single-cell analysis toolkit for gene expression data in R

Description

Subsets the columns (cells) of a SCESet based on matching conditions in the rows of pData(object).

Usage

filter(object, ...)

## S4 method for signature 'SCESet'
filter(object, ...)

filter.SCESet(object, ...)

Arguments

object	A SCESet object.
...	Additional arguments to be passed to dplyr::filter to act on pData(object).

Value

An SCESet object.

Examples

data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset_treat1 <- filter(example_sceset, Treatment == "treat1")

dynverse/scaterlegacy documentation built on Feb. 17, 2020, 5:07 a.m.