momspiCytokines: Create MOMS-PI cytokines SummarizedExperiment object

In dozmorovlab/HMP2Data: 16s rRNA sequencing data from the Human Microbiome Project 2

Description

The Multi-Omic Microbiome Study-Pregnancy Initiative (MOMS-PI) was funded by the NIH Roadmap HUman Microbiome Project to understand the impact of the vaginal microbiome on pregnancy and the fetal microbiome. This longitudinal study contains samples from three body sites of 116 women. This summarizedExperiment object contains the cytokine data that was collected and the participant metadata.

Usage

momspiCytokines()

Format

A SummarizedExperiment object with 29 features and 1396 samples.

colData

file_id

File identifier

md5

md5 hash for the file

size

file size

urls

URL for the file

sample_id

Sample identifier

file_name

Filename which the sample was taken from

subject_id

Participant identifier

sample_body_site

Body site of the sample

visit_number

Visit number

subject_gender

Participant gender

subject_race

Participant race

study_full_name

Name of the study

project_name

Name of project

Value

A SummarizedExperiment object

Examples

momspiCyto <- momspiCytokines()

dozmorovlab/HMP2Data documentation built on June 5, 2019, 5:12 p.m.