IBD16S: Create HMP2 16S sequencing data for Inflammatory Bowel...
In dozmorovlab/HMP2Data: 16s rRNA sequencing data from the Human Microbiome Project 2
Description
Usage
Format
Value
Examples
Description
The HMP2 study gathered data on the microbiome for
patients with different disease. This dataset contains
16S rRNA data for 196 patients with IBD over multiple visits.
Usage
1
IBD16S()
Format
A phyloseq object with 982 taxa and 178 samples.
OTU Table
A counts matrix for the rRNA-seq results.
Sample Data
- Project
Name of the project
- sample_id
Sample identifier
- subject_id
Subject identifier
See colnames(sample_data(IBD16S())) for remaining values.
Taxonomy Table
Taxonomy table for the taxa identified.
Value
a phyloseq object
Examples
1
IBD <- IBD16S()
dozmorovlab/HMP2Data documentation built on June 5, 2019, 5:12 p.m.
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Description Usage Format Value Examples
Description
The HMP2 study gathered data on the microbiome for patients with different disease. This dataset contains 16S rRNA data for 196 patients with IBD over multiple visits.
Usage
1 | IBD16S()
|
Format
A phyloseq object with 982 taxa and 178 samples.
OTU Table
A counts matrix for the rRNA-seq results.
Sample Data
- Project
Name of the project
- sample_id
Sample identifier
- subject_id
Subject identifier
See colnames(sample_data(IBD16S())) for remaining values.
Taxonomy Table
Taxonomy table for the taxa identified.
Value
a phyloseq object
Examples
1 | IBD <- IBD16S()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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