T2D16S: Create HMP2 16S sequencing data for Type 2 Diabetes (T2D)...
In dozmorovlab/HMP2Data: 16s rRNA sequencing data from the Human Microbiome Project 2
Description
Usage
Format
Value
Examples
Description
The HMP2 study gathered data on the microbiome for
patients with different disease. This dataset contains
16S rRNA data for 79 patients with T2D over multiple visits.
Usage
1
T2D16S()
Format
A phyloseq object with 12,062 taxa and 2,208 samples.
OTU Table
A counts matrix for the rRNA-seq results.
Sample Data
- file_id
File identifier
- md5
md5 hash for the file
- size
file size
- urls
URL for the file
- sample_id
Sample identifier
- file_name
Filename which the sample was taken from
- subject_id
Participant identifier
- sample_body_site
Body site of the sample
- visit_number
Visit number
- subject_gender
Participant gender
- subject_race
Participant race
- study_full_name
Name of the study
- project_name
Name of project
Taxonomy Table
Taxonomy table for the taxa identified.
Value
a phyloseq object
Examples
1
T2D <- T2D16S()
dozmorovlab/HMP2Data documentation built on June 5, 2019, 5:12 p.m.
R Package Documentation
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Description Usage Format Value Examples
Description
The HMP2 study gathered data on the microbiome for patients with different disease. This dataset contains 16S rRNA data for 79 patients with T2D over multiple visits.
Usage
1 | T2D16S()
|
Format
A phyloseq object with 12,062 taxa and 2,208 samples.
OTU Table
A counts matrix for the rRNA-seq results.
Sample Data
- file_id
File identifier
- md5
md5 hash for the file
- size
file size
- urls
URL for the file
- sample_id
Sample identifier
- file_name
Filename which the sample was taken from
- subject_id
Participant identifier
- sample_body_site
Body site of the sample
- visit_number
Visit number
- subject_gender
Participant gender
- subject_race
Participant race
- study_full_name
Name of the study
- project_name
Name of project
Taxonomy Table
Taxonomy table for the taxa identified.
Value
a phyloseq object
Examples
1 | T2D <- T2D16S()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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